Migrate from autoflake, black, isort, pyupgrade, flake8 and pydocstyle, to ruff

ruff is faster and handle everything we had prior.

isort configuration done based on the indication from
https://github.com/astral-sh/ruff/issues/4670, previousely based on
reorder-python-import (#11896)

flake8-docstrings was a wrapper around pydocstyle (now archived) that
explicitly asks to use ruff in https://github.com/PyCQA/pydocstyle/pull/658.

flake8-typing-import is useful mainly for project that support python 3.7
and the one useful check will be implemented in https://github.com/astral-sh/ruff/issues/2302

We need to keep blacken-doc because ruff does not handle detection
of python code inside .md and .rst. The direct link to the repo is
now used to avoid a redirection.

Manual fixes:
- Lines that became too long
- % formatting that was not done automatically
- type: ignore that were moved around
- noqa of hard to fix issues (UP031 generally)
- fmt: off and fmt: on that is not really identical
  between black and ruff
- autofix re-order in pre-commit from faster to slower

Co-authored-by: Ran Benita <ran@unusedvar.com>

testing/python/integration.py

@@ -1,9 +1,9 @@
 # mypy: allow-untyped-defs
-import pytest
 from _pytest._code import getfslineno
 from _pytest.fixtures import getfixturemarker
 from _pytest.pytester import Pytester
 from _pytest.python import Function
+import pytest
 
 
 def test_wrapped_getfslineno() -> None: