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Import LAPACK: top directory

This commit is contained in:
Martin Köhler 2016-10-26 15:14:13 +02:00
parent 57eee3fa43
commit 77006cc2a3
7 changed files with 282 additions and 253 deletions
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38
lapack-netlib/CMakeLists.txt
View File

@ -3,7 +3,7 @@ project(LAPACK Fortran)
set(LAPACK_MAJOR_VERSION 3) set(LAPACK_MAJOR_VERSION 3)
set(LAPACK_MINOR_VERSION 6) set(LAPACK_MINOR_VERSION 6)
set(LAPACK_PATCH_VERSION 0) set(LAPACK_PATCH_VERSION 1)
set( set(
LAPACK_VERSION LAPACK_VERSION
${LAPACK_MAJOR_VERSION}.${LAPACK_MINOR_VERSION}.${LAPACK_PATCH_VERSION} ${LAPACK_MAJOR_VERSION}.${LAPACK_MINOR_VERSION}.${LAPACK_PATCH_VERSION}
@ -17,11 +17,10 @@ set(
set(CMAKE_MACOSX_RPATH ON) set(CMAKE_MACOSX_RPATH ON)
set(CMAKE_SKIP_BUILD_RPATH FALSE) set(CMAKE_SKIP_BUILD_RPATH FALSE)
set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE) set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib") list(FIND CMAKE_PLATFORM_IMPLICIT_LINK_DIRECTORIES "${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}" isSystemDir)
set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
list(FIND CMAKE_PLATFORM_IMPLICIT_LINK_DIRECTORIES "${CMAKE_INSTALL_PREFIX}/lib" isSystemDir)
if("${isSystemDir}" STREQUAL "-1") if("${isSystemDir}" STREQUAL "-1")
set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib") set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}")
set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
endif() endif()
@ -37,7 +36,7 @@ set(CMAKE_MODULE_PATH "${LAPACK_SOURCE_DIR}/CMAKE" ${CMAKE_MODULE_PATH})
if (UNIX) if (UNIX)
if ( "${CMAKE_Fortran_COMPILER}" MATCHES "ifort" ) if ( "${CMAKE_Fortran_COMPILER}" MATCHES "ifort" )
set( CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -fltconsistency -fp_port" ) set( CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -fp-model strict" )
endif () endif ()
if ( "${CMAKE_Fortran_COMPILER}" MATCHES "xlf" ) if ( "${CMAKE_Fortran_COMPILER}" MATCHES "xlf" )
set( CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -qnosave -qstrict=none" ) set( CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -qnosave -qstrict=none" )
@ -47,6 +46,33 @@ if (UNIX)
STRING(REPLACE \;mtsk\; \; CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES "${CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES}") STRING(REPLACE \;mtsk\; \; CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES "${CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES}")
endif () endif ()
if ( CMAKE_Fortran_COMPILER_ID STREQUAL "Compaq" )
if ( WIN32 )
if (CMAKE_GENERATOR STREQUAL "NMake Makefiles")
get_filename_component(CMAKE_Fortran_COMPILER_CMDNAM ${CMAKE_Fortran_COMPILER} NAME_WE)
message(STATUS "Using Compaq Fortran compiler with command name ${CMAKE_Fortran_COMPILER_CMDNAM}")
set( cmd ${CMAKE_Fortran_COMPILER_CMDNAM} )
string( TOLOWER "${cmd}" cmdlc )
if ( cmdlc STREQUAL "df" )
message(STATUS "Assume the Compaq Visual Fortran Compiler is being used")
set(CMAKE_Fortran_USE_RESPONSE_FILE_FOR_OBJECTS 1)
set(CMAKE_Fortran_USE_RESPONSE_FILE_FOR_INCLUDES 1)
#This is a workaround that is needed to avoid forward-slashes in the
#filenames listed in response files from incorrectly being interpreted as
#introducing compiler command options
if (${BUILD_SHARED_LIBS})
message(FATAL_ERROR "Making of shared libraries with CVF has not been tested.")
endif()
set(str "NMake version 9 or later should be used. NMake version 6.0 which is\n")
set(str "${str} included with the CVF distribution fails to build Lapack because\n")
set(str "${str} the number of source files exceeds the limit for NMake v6.0\n")
message(STATUS ${str})
set(CMAKE_Fortran_LINK_EXECUTABLE "LINK /out:<TARGET> <LINK_FLAGS> <LINK_LIBRARIES> <OBJECTS>")
endif()
endif()
endif()
endif()
# Get Python # Get Python
find_package(PythonInterp) find_package(PythonInterp)
message(STATUS "Looking for Python found - ${PYTHONINTERP_FOUND}") message(STATUS "Looking for Python found - ${PYTHONINTERP_FOUND}")

6
lapack-netlib/LICENSE
View File

@ -1,9 +1,9 @@
Copyright (c) 1992-2015 The University of Tennessee and The University Copyright (c) 1992-2016 The University of Tennessee and The University
of Tennessee Research Foundation. All rights of Tennessee Research Foundation. All rights
reserved. reserved.
Copyright (c) 2000-2015 The University of California Berkeley. All Copyright (c) 2000-2016 The University of California Berkeley. All
rights reserved. rights reserved.
Copyright (c) 2006-2015 The University of Colorado Denver. All rights Copyright (c) 2006-2016 The University of Colorado Denver. All rights
reserved. reserved.
$COPYRIGHT$ $COPYRIGHT$

7
lapack-netlib/Makefile
View File

@ -14,13 +14,14 @@ lib: lapacklib tmglib
clean: cleanlib cleantesting cleanblas_testing cleancblas_testing clean: cleanlib cleantesting cleanblas_testing cleancblas_testing
lapack_install: lapack_install:
( cd INSTALL; $(MAKE); ) ( cd INSTALL; $(MAKE); ./testlsame; ./testslamch; ./testdlamch; \
./testsecond; ./testdsecnd; ./testieee; ./testversion )
blaslib: blaslib:
( cd BLAS/SRC; $(MAKE) ) ( cd BLAS/SRC; $(MAKE) )
cblaslib: cblaslib:
( cd CBLAS/src; $(MAKE) ) ( cd CBLAS; $(MAKE) )
lapacklib: lapack_install lapacklib: lapack_install
( cd SRC; $(MAKE) ) ( cd SRC; $(MAKE) )
@ -116,7 +117,7 @@ cleanblas_testing:
( cd BLAS; rm -f xblat* ) ( cd BLAS; rm -f xblat* )
cleancblas_testing: cleancblas_testing:
( cd CBLAS; $(MAKE) cleanexe ) ( cd CBLAS/testing; $(MAKE) clean )
cleantesting: cleantesting:
( cd TESTING/LIN; $(MAKE) clean ) ( cd TESTING/LIN; $(MAKE) clean )

2
lapack-netlib/README
View File

@ -22,6 +22,8 @@ VERSION 3.4.1 : April 2012
VERSION 3.4.2 : September 2012 VERSION 3.4.2 : September 2012
VERSION 3.5.0 : November 2013 VERSION 3.5.0 : November 2013
VERSION 3.6.0 : November 2015 VERSION 3.6.0 : November 2015
VERSION 3.6.1 : June 2016
LAPACK is a library of Fortran 90 with subroutines for solving LAPACK is a library of Fortran 90 with subroutines for solving
the most commonly occurring problems in numerical linear algebra. the most commonly occurring problems in numerical linear algebra.

6
lapack-netlib/lapack.pc.in
View File

@ -1,9 +1,9 @@
prefix=@prefix@ prefix=@CMAKE_INSTALL_PREFIX@
libdir=@libdir@ libdir=@CMAKE_INSTALL_PREFIX@/@CMAKE_INSTALL_LIBDIR@
Name: lapack Name: lapack
Description: FORTRAN reference implementation of LAPACK Linear Algebra PACKage Description: FORTRAN reference implementation of LAPACK Linear Algebra PACKage
Version: @LAPACK_VERSION@ Version: @LAPACK_VERSION@
URL: http://www.netlib.org/lapack/ URL: http://www.netlib.org/lapack/
Libs: -L${libdir} -llapack Libs: -L@CMAKE_INSTALL_PREFIX@/@CMAKE_INSTALL_LIBDIR@ -llapack
Requires: blas Requires: blas

130
lapack-netlib/lapack_testing.py
View File

@ -6,7 +6,7 @@
# lapack_testing.py # lapack_testing.py
############################################################################### ###############################################################################
from __future__ import print_function
from subprocess import Popen, STDOUT, PIPE from subprocess import Popen, STDOUT, PIPE
import os, sys, math import os, sys, math
import getopt import getopt
@ -15,9 +15,9 @@ try:
opts, args = getopt.getopt(sys.argv[1:], "hd:srep:t:n", opts, args = getopt.getopt(sys.argv[1:], "hd:srep:t:n",
["help", "dir", "short", "run", "error","prec=","test=","number"]) ["help", "dir", "short", "run", "error","prec=","test=","number"])
except getopt.error, msg: except getopt.error as msg:
print msg print(msg)
print "for help use --help" print("for help use --help")
sys.exit(2) sys.exit(2)
short_summary=0 short_summary=0
@ -33,38 +33,38 @@ abs_bin_dir=os.path.normpath(os.path.join(os.getcwd(),bin_dir))
for o, a in opts: for o, a in opts:
if o in ("-h", "--help"): if o in ("-h", "--help"):
print sys.argv[0]+" [-h|--help] [-d dir |--dir dir] [-s |--short] [-r |--run] [-e |--error] [-p p |--prec p] [-t test |--test test] [-n | --number]" print(sys.argv[0]+" [-h|--help] [-d dir |--dir dir] [-s |--short] [-r |--run] [-e |--error] [-p p |--prec p] [-t test |--test test] [-n | --number]")
print " - h is to print this message" print(" - h is to print this message")
print " - r is to use to run the LAPACK tests then analyse the output (.out files). By default, the script will not run all the LAPACK tests" print(" - r is to use to run the LAPACK tests then analyse the output (.out files). By default, the script will not run all the LAPACK tests")
print " - d [dir] is to indicate where is the LAPACK testing directory (.out files). By default, the script will use ." print(" - d [dir] is to indicate where is the LAPACK testing directory (.out files). By default, the script will use .")
print " LEVEL OF OUTPUT" print(" LEVEL OF OUTPUT")
print " - x is to print a detailed summary" print(" - x is to print a detailed summary")
print " - e is to print only the error summary" print(" - e is to print only the error summary")
print " - s is to print a short summary" print(" - s is to print a short summary")
print " - n is to print the numbers of failing tests (turn on summary mode)" print(" - n is to print the numbers of failing tests (turn on summary mode)")
print " SECLECTION OF TESTS:" print(" SECLECTION OF TESTS:")
print " - p [s/c/d/z/x] is to indicate the PRECISION to run:" print(" - p [s/c/d/z/x] is to indicate the PRECISION to run:")
print " s=single" print(" s=single")
print " d=double" print(" d=double")
print " sd=single/double" print(" sd=single/double")
print " c=complex" print(" c=complex")
print " z=double complex" print(" z=double complex")
print " cz=complex/double complex" print(" cz=complex/double complex")
print " x=all [DEFAULT]" print(" x=all [DEFAULT]")
print " - t [lin/eig/mixed/rfp/all] is to indicate which TEST FAMILY to run:" print(" - t [lin/eig/mixed/rfp/all] is to indicate which TEST FAMILY to run:")
print " lin=Linear Equation" print(" lin=Linear Equation")
print " eig=Eigen Problems" print(" eig=Eigen Problems")
print " mixed=mixed-precision" print(" mixed=mixed-precision")
print " rfp=rfp format" print(" rfp=rfp format")
print " all=all tests [DEFAULT]" print(" all=all tests [DEFAULT]")
print " EXAMPLES:" print(" EXAMPLES:")
print " ./lapack_testing.py -n" print(" ./lapack_testing.py -n")
print " Will return the numbers of failed tests by analyzing the LAPACK output" print(" Will return the numbers of failed tests by analyzing the LAPACK output")
print " ./lapack_testing.py -n -r -p s" print(" ./lapack_testing.py -n -r -p s")
print " Will return the numbers of failed tests in REAL precision by running the LAPACK Tests then analyzing the output" print(" Will return the numbers of failed tests in REAL precision by running the LAPACK Tests then analyzing the output")
print " ./lapack_testing.py -n -p s -t eig " print(" ./lapack_testing.py -n -p s -t eig ")
print " Will return the numbers of failed tests in REAL precision by analyzing only the LAPACK output of EIGEN testings" print(" Will return the numbers of failed tests in REAL precision by analyzing only the LAPACK output of EIGEN testings")
print "Written by Julie Langou (June 2011) " print("Written by Julie Langou (June 2011) ")
sys.exit(0) sys.exit(0)
else: else:
if o in ("-s", "--short"): if o in ("-s", "--short"):
@ -89,7 +89,7 @@ os.chdir(test_dir)
execution=1 execution=1
summary="\n\t\t\t--> LAPACK TESTING SUMMARY <--\n"; summary="\n\t\t\t--> LAPACK TESTING SUMMARY <--\n";
if with_file: summary+= "\t\tProcessing LAPACK Testing output found in the "+test_dir+" direcory\n"; if with_file: summary+= "\t\tProcessing LAPACK Testing output found in the "+test_dir+" directory\n";
summary+="SUMMARY \tnb test run \tnumerical error \tother error \n"; summary+="SUMMARY \tnb test run \tnumerical error \tother error \n";
summary+="================ \t===========\t=================\t================ \n"; summary+="================ \t===========\t=================\t================ \n";
nb_of_test=0 nb_of_test=0
@ -129,12 +129,12 @@ def run_summary_test( f, cmdline, short_summary):
error_message=cmdline+" did not work" error_message=cmdline+" did not work"
if r != 0 and not with_file: if r != 0 and not with_file:
print "---- TESTING " + cmdline.split()[0] + "... FAILED(" + error_message +") !" print("---- TESTING " + cmdline.split()[0] + "... FAILED(" + error_message +") !")
for line in pipe.readlines(): for line in pipe.readlines():
f.write(str(line)) f.write(str(line))
elif r != 0 and with_file and not short_summary: elif r != 0 and with_file and not short_summary:
print "---- WARNING: please check that you have the LAPACK output : "+cmdline+"!" print("---- WARNING: please check that you have the LAPACK output : "+cmdline+"!")
print "---- WARNING: with the option -r, we can run the LAPACK testing for you" print("---- WARNING: with the option -r, we can run the LAPACK testing for you")
# print "---- "+error_message # print "---- "+error_message
else: else:
for line in pipe.readlines(): for line in pipe.readlines():
@ -145,14 +145,14 @@ def run_summary_test( f, cmdline, short_summary):
whereisrun=words_in_line.index("run)") whereisrun=words_in_line.index("run)")
nb_test_run+=int(words_in_line[whereisrun-2]) nb_test_run+=int(words_in_line[whereisrun-2])
if (line.find("out of")!=-1): if (line.find("out of")!=-1):
if (short_summary==0): print line, if (short_summary==0): print(line, end=' ')
whereisout= words_in_line.index("out") whereisout= words_in_line.index("out")
nb_test_fail+=int(words_in_line[whereisout-1]) nb_test_fail+=int(words_in_line[whereisout-1])
if ((line.find("illegal")!=-1) or (line.find("Illegal")!=-1)): if ((line.find("illegal")!=-1) or (line.find("Illegal")!=-1)):
if (short_summary==0):print line, if (short_summary==0):print(line, end=' ')
nb_test_illegal+=1 nb_test_illegal+=1
if (line.find(" INFO")!=-1): if (line.find(" INFO")!=-1):
if (short_summary==0):print line, if (short_summary==0):print(line, end=' ')
nb_test_info+=1 nb_test_info+=1
if (with_file==1): if (with_file==1):
pipe.close() pipe.close()
@ -170,10 +170,10 @@ except IOError:
f = sys.stdout f = sys.stdout
if (short_summary==0): if (short_summary==0):
print " " print(" ")
print "---------------- Testing LAPACK Routines ----------------" print("---------------- Testing LAPACK Routines ----------------")
print " " print(" ")
print "-- Detailed results are stored in", filename print("-- Detailed results are stored in", filename)
dtypes = ( dtypes = (
("s", "d", "c", "z"), ("s", "d", "c", "z"),
@ -194,7 +194,7 @@ elif prec=='cz':
range_prec=[2,3] range_prec=[2,3]
else: else:
prec='x'; prec='x';
range_prec=range(4) range_prec=list(range(4))
if test=='lin': if test=='lin':
range_test=[15] range_test=[15]
@ -204,9 +204,9 @@ elif test=='mixed':
elif test=='rfp': elif test=='rfp':
range_test=[17] range_test=[17]
elif test=='eig': elif test=='eig':
range_test=range(15) range_test=list(range(15))
else: else:
range_test=range(18) range_test=list(range(18))
list_results = [ list_results = [
[0, 0, 0, 0, 0], [0, 0, 0, 0, 0],
@ -220,9 +220,9 @@ for dtype in range_prec:
name = dtypes[1][dtype] name = dtypes[1][dtype]
if (short_summary==0): if (short_summary==0):
print " " print(" ")
print "------------------------- %s ------------------------" % name print("------------------------- %s ------------------------" % name)
print " " print(" ")
sys.stdout.flush() sys.stdout.flush()
dtests = ( dtests = (
@ -268,7 +268,7 @@ for dtype in range_prec:
# EIG TESTS # EIG TESTS
cmdbase="xeigtst"+letter+" < "+dtests[0][dtest]+".in > "+dtests[2][dtest]+".out" cmdbase="xeigtst"+letter+" < "+dtests[0][dtest]+".in > "+dtests[2][dtest]+".out"
if (not just_errors and not short_summary): if (not just_errors and not short_summary):
print "--> Testing "+name+" "+dtests[1][dtest]+" [ "+cmdbase+" ]" print("--> Testing "+name+" "+dtests[1][dtest]+" [ "+cmdbase+" ]")
# Run the process: either to read the file or run the LAPACK testing # Run the process: either to read the file or run the LAPACK testing
nb_test = run_summary_test(f, cmdbase, short_summary) nb_test = run_summary_test(f, cmdbase, short_summary)
list_results[0][dtype]+=nb_test[0] list_results[0][dtype]+=nb_test[0]
@ -279,18 +279,18 @@ for dtype in range_prec:
if (not short_summary): if (not short_summary):
if (nb_test[0]>0 and just_errors==0): if (nb_test[0]>0 and just_errors==0):
print "--> Tests passed: "+str(nb_test[0]) print("--> Tests passed: "+str(nb_test[0]))
if (nb_test[1]>0): if (nb_test[1]>0):
print "--> Tests failing to pass the threshold: "+str(nb_test[1]) print("--> Tests failing to pass the threshold: "+str(nb_test[1]))
if (nb_test[2]>0): if (nb_test[2]>0):
print "--> Illegal Error: "+str(nb_test[2]) print("--> Illegal Error: "+str(nb_test[2]))
if (nb_test[3]>0): if (nb_test[3]>0):
print "--> Info Error: "+str(nb_test[3]) print("--> Info Error: "+str(nb_test[3]))
if (got_error>0 and just_errors==1): if (got_error>0 and just_errors==1):
print "ERROR IS LOCATED IN "+name+" "+dtests[1][dtest]+" [ "+cmdbase+" ]" print("ERROR IS LOCATED IN "+name+" "+dtests[1][dtest]+" [ "+cmdbase+" ]")
print "" print("")
if (just_errors==0): if (just_errors==0):
print "" print("")
# elif (got_error>0): # elif (got_error>0):
# print dtests[2][dtest]+".out \t"+str(nb_test[1])+"\t"+str(nb_test[2])+"\t"+str(nb_test[3]) # print dtests[2][dtest]+".out \t"+str(nb_test[1])+"\t"+str(nb_test[2])+"\t"+str(nb_test[3])
@ -308,9 +308,9 @@ for dtype in range_prec:
list_results[3][4]+=list_results[3][dtype] list_results[3][4]+=list_results[3][dtype]
if only_numbers==1: if only_numbers==1:
print str(list_results[1][4])+"\n"+str(list_results[2][4]+list_results[3][4]) print(str(list_results[1][4])+"\n"+str(list_results[2][4]+list_results[3][4]))
else: else:
print summary print(summary)
if (list_results[0][4] > 0 ): if (list_results[0][4] > 0 ):
percent_num_error=float(list_results[1][4])/float(list_results[0][4])*100 percent_num_error=float(list_results[1][4])/float(list_results[0][4])*100
percent_error=float(list_results[2][4]+list_results[3][4])/float(list_results[0][4])*100 percent_error=float(list_results[2][4]+list_results[3][4])/float(list_results[0][4])*100
@ -318,9 +318,9 @@ else:
percent_num_error=0 percent_num_error=0
percent_error=0 percent_error=0
if (prec=='x'): if (prec=='x'):
print "--> ALL PRECISIONS\t"+str(list_results[0][4])+"\t\t"+str(list_results[1][4])+"\t("+"%.3f" % percent_num_error+"%)\t"+str(list_results[2][4]+list_results[3][4])+"\t("+"%.3f" % percent_error+"%)\t""\n" print("--> ALL PRECISIONS\t"+str(list_results[0][4])+"\t\t"+str(list_results[1][4])+"\t("+"%.3f" % percent_num_error+"%)\t"+str(list_results[2][4]+list_results[3][4])+"\t("+"%.3f" % percent_error+"%)\t""\n")
if list_results[0][4] == 0: if list_results[0][4] == 0:
print "NO TESTS WERE ANALYZED, please use the -r option to run the LAPACK TESTING" print("NO TESTS WERE ANALYZED, please use the -r option to run the LAPACK TESTING")
# This may close the sys.stdout stream, so make it the last statement # This may close the sys.stdout stream, so make it the last statement
f.close() f.close()

4
lapack-netlib/make.inc.example
View File

@ -1,7 +1,7 @@
#################################################################### ####################################################################
# LAPACK make include file. # # LAPACK make include file. #
# LAPACK, Version 3.6.0 # # LAPACK, Version 3.6.1 #
# November 2015 # # June 2016 #
#################################################################### ####################################################################
# #
SHELL = /bin/sh SHELL = /bin/sh